GeneMerge Supplementary InformationCastillo-Davis, C.I. and D.L. Hartl 2003. Bioinformatics 19(7):891-892
ACKNOWLEDGEMENTSC.I.C-D would like to thank Peter Bouman, Mark Smith, Jeff Townsend, Alex Platt, and Yun Tao for statistical discussion; David Emmert, Han Xie, Midori Harris, Aubrey de Grey, Xin Lu, Paul Grosu, and Chris Dagdigian for providing files and technical help; Jose Ranz for beta-testing early versions of the program, Dan Neafsey for reading the manuscript, and Jun Liu, Erin Conlon, X. Shirely Liu, Laura Garwin, Debbie Marks, and Andrew Murray for support and encouragement. Special thanks to Josh Cherry for help in software optimization and Jeff Townsend for sample microarray data.
Gene-association DataGene-association files are being constructed continuously. As of publication, GO data in all three categories, molecular function, biological process, and cellular component, are available for the following species: D. melanogaster, C. elegans, S. pombe, O. sativa, H. sapiens, S. cerevisiae, M. musculus, A. thaliana, V. cholerae, G. morsitans, and R. norvegicus. Additionally: chromosomal location data, including chromosomal arm, and map location data are available for D. melanogaster; deletion viability data are available for S. cerevisiae; KEGG metabolic and regulatory pathway data are available for D. melanogaster and S. cerevisiae; RNAi phenotype gene-association data are available for C. elegans. More data for use with GeneMerge are available for download and are described here.
Example Data
Population Gene SetStudy Gene SetsGene-Association FilesDescription FilesResults The Excel files below contain complete results from the functional and pathway analyses and polymorphism/deletion viability study discussed in the long version of the manuscript.
GeneMerge - Post-genomic analysis, data mining, and hypothesis testing
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